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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgggccaggggtcggaacgagctacccctctatgctaactctttttgctgcgtatggtcccctcccgatctgcagttgatcctgccccagtttacaaatgaaatctcttaaatctgtcatacccctcctgccctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCCGAGACCCTCCGCGACCCTCGCGGCTTCGCGGTCAAGTTCTACACACGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785653|gb|AV642325.1|AV642325
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGC
EST: gi|6548949|gb|AV394733.1|AV394733
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|22067149|gb|BQ817372.1|BQ817372
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|10777114|gb|AV633794.1|AV633794
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|22068250|gb|BQ818189.1|BQ818189
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|8932860|gb|BE227621.1|BE227621
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCT
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCT
EST: gi|15697484|gb|BI721789.1|BI721789
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTATCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|22060823|gb|BQ813924.1|BQ813924
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCCCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|22069902|gb|BQ819380.1|BQ819380
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|23361192|gb|BU649012.1|BU649012
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|14240802|gb|BG859618.1|BG859618
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|6544288|gb|AV390072.1|AV390072
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|10771169|gb|AV621992.1|AV621992
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|6547218|gb|AV393002.1|AV393002
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|15691958|gb|BI716263.1|BI716263
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|10784886|gb|AV641558.1|AV641558
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCT
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCT
EST: gi|10775671|gb|AV632351.1|AV632351
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGG
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGG
EST: gi|22064859|gb|BQ816064.1|BQ816064
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|22071695|gb|BQ821033.1|BQ821033
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|34985582|gb|CF559499.1|CF559499
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|6545840|gb|AV391624.1|AV391624
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|14239601|gb|BG858417.1|BG858417
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|34986788|gb|CF560705.1|CF560705
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|14227441|gb|BG846257.1|BG846257
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
EST: gi|22076101|gb|BQ824877.1|BQ824877
EST:     ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG                         ACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC
genomic: ACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAGgtgcgcgggc ... ctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttacaaatgaaatctcttaaatctgtcatacccctcctgccctcctcacagACGCCCGTCATCGTGCGCTTCTCCACTGTGGTGCACGAGCGCGGCTCGCCCGAGACCCTCCGCGACCCTCGCGGCTTCGCGGTCAAGTTCTACACACGTG
                             tcatacccctcctgcc  CT-rich tract
        aaatgaaat  TA-rich tract