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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttctggtttggacggcgattcctgaactattgggacctatcttcgttgggctagggcacaaaaccccaccccctcttcaaaccccaccccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGACTGGATCCGGATCCAACTACTGGATCGTGAAGAACAGCTGGGGCGCGGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP00016
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700888|gb|BI725193.1|BI725193
EST:     CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCG                         GCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
genomic: CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCGgtgaggggga ... cccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
EST: gi|15695989|gb|BI720294.1|BI720294
EST:     CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGATGACCCCACCTGCG                         GCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
genomic: CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCGgtgaggggga ... cccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
EST: gi|23365110|gb|BU652930.1|BU652930
EST:     CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCG                         GCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
genomic: CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCGgtgaggggga ... cccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
EST: gi|15700890|gb|BI725195.1|BI725195
EST:     CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCG                         GCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
genomic: CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCGgtgaggggga ... cccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
EST: gi|15700889|gb|BI725194.1|BI725194
EST:     CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCG                         GCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA
genomic: CAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACCCCACCTGCGgtgaggggga ... cccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttgggctagggcacaaaaccccaccccctcttcaaaccccaccccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGACTGGATCCGGATCCAACTACTGGATCGTGAAGAACAGCTGGGGCGCGGA
                                       ccccaccccacccc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catttctggtttggacggcgattcctgaactattgggacctatcttcgttgggctagggcacaaaaccccaccccctcttcaaaccccaccccaccccagGCACCAGCCTGAACCACGGCGTGCTGGTGGTGGGCTACGGCAAGGACGTGACTGGATCCGGATCCAACTACTGGATCGTGAAGAACAGCTGGGGCGCGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - ttgggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacccca