1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgagtgcaggcctggctcttggcttcgtgtgtgtgcgggctgtgaagtgccactcacaacctgcttcccttgtgcacatgtggccccaccacgccaacagGTTGAGATTGTGGTCACTGCCGCCCTGTGAGGGTGTGCTGTGAGCGTCCAGGGCCGATTGCTTGGAGAAGCGCAAGGGAGGCAGTCGCACACGGGAGCGG
species | Chlamydomonas reinhardtii |
transcript | EDO99629 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCACCCGCGCCACCGTGGGTGTGACGTGGCTGGCGGACCCGGGCTGGAAG GTTGAGATTGTGGTCACTGCCGCCCTGTGAGGGTGTGCTGTGAGCGTCCAG
genomic: CCACCCGCGCCACCGTGGGTGTGACGTGGCTGGCGGACCCGGGCTGGAAGgtgtgtgggc ... acgccaacagGTTGAGATTGTGGTCACTGCCGCCCTGTGAGGGTGTGCTGTGAGCGTCCAG
agtgccactcacaacctgcttcccttgtgcacatgtggccccaccacgccaacagGTTGAGATTGTGGTCACTGCCGCCCTGTGAGGGTGTGCTGTGAGCGTCCAGGGCCGATTGCTTGGAGAAGCGCAAGGGAGGCAGTCGCACACGGGAGCGG
cactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtgcaggcctggctcttggcttcgtgtgtgtgcgggctgtgaagtgccactcacaacctgcttcccttgtgcacatgtggccccaccacgccaacagGTTGAGATTGTGGTCACTGCCGCCCTGTGAGGGTGTGCTGTGAGCGTCCAGGGCCGATTGCTTGGAGAAGCGCAAGGGAGGCAGTCGCACACGGGAGCGG
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tgagtgca
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- - - - - - - - - - - - - - - - - - - - - - - - - -actcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtg