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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttctggcgcgcgccactccagtctcgagccggcctgaccgcggttttacatttgcagGTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCGAACGCGCACACATACCACATCAACTCGATCTCCGTGAACAGCGACCAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO98296
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161806974|gb|FC091756.1|FC091756
EST:     CGAACAGCCCGGTCTCGCTGCGCTTGACGCAGCCGCTGCGCCTGCCCCGG                         GTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCG
genomic: CGAACAGCCCGGTCTCGCTGCGCCTGACGCAGCCGCTGCGCCTGCCCCGGgtgcgttctg ... acatttgcagGTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCG
EST: gi|161819998|gb|FC109684.1|FC109684
EST:     CGAACAGCCCGGTCTCGCTGCGCTTGACGCAGCCGCTGCGCCTGCCCCGG                         GTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCG
genomic: CGAACAGCCCGGTCTCGCTGCGCCTGACGCAGCCGCTGCGCCTGCCCCGGgtgcgttctg ... acatttgcagGTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCG
EST: gi|161802583|gb|FC092394.1|FC092394
EST:     CGAACAGCCCGGTCTCGCTGCGCTTGACGCAGCCGCTGCGCCTGCCCCGG                         GTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGT
genomic: CGAACAGCCCGGTCTCGCTGCGCCTGACGCAGCCGCTGCGCCTGCCCCGGgtgcgttctg ... acatttgcagGTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGT
EST: gi|161795145|gb|FC078796.1|FC078796
EST:     CGAACAGCCCGGTCTCGCTGCGCTTGACGCAGCCGCTGCGCCTGCCCCGG                         GTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCG
genomic: CGAACAGCCCGGTCTCGCTGCGCCTGACGCAGCCGCTGCGCCTGCCCCGGgtgcgttctg ... acatttgcagGTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggcgcgcgccactccagtctcgagccggcctgaccgcggttttacatttgcagGTGACCAGCACGGAGGTGCTCCTAGCGGCTCGCTGCAAGCGCGTGTTCGCGAACGCGCACACATACCACATCAACTCGATCTCCGTGAACAGCGACCAGC
                             gcctgac  putative branch site (score: 3)
                                         ttttacattt  TA-rich tract