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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtggccagaaattgcaggggtcgcgacagtggtagtgtaagggcacgcccacgcatacagcggcaatttgggcccaatttcgtgtcagtcaacgcatgtaactggatcatgtgtgtggatgcagGTACGTGATGTCGATGGTGGACATGTTCGGCGACTGCGCGGCGCACGGCGCGTCCGCCACACTAGACAAGTATGCCGCCTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98047
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437919|gb|BM003139.1|BM003139
EST:     GAGATTTGGAAGGCGCGCCGCCGCGCAGTGGTGCCAGCCCTGCACCGCAA                         GTACGTGATGTCGATGGTGGACATGTTCGGCGACTGCGCGGCGCACGGCGC
genomic: GAGATTTGGAAGGCGCGCCGCCGCGCAGTGGTGCCAGCCCTGCACCGCAAgtgggtggcc ... gtggatgcagGTACGTGATGTCGATGGTGGACATGTTCGGCGACTGCGCGGCGCACGGCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggcccaatttcgtgtcagtcaacgcatgtaactggatcatgtgtgtggatgcagGTACGTGATGTCGATGGTGGACATGTTCGGCGACTGCGCGGCGCACGGCGCGTCCGCCACACTAGACAAGTATGCCGCCTCAG
                          atgtaac  putative branch site (score: 3)
      aattt  TA-rich tract