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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgctgaaaggtgccgtgcagaagcgcaaacttcagtatcagctttgacatgggagtgcaatcatcagctttgctaatcttcatgcatactacaacaatcccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98046
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15367687|gb|BI527113.1|BI527113
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCNCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|14237765|gb|BG856581.1|BG856581
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAAGT-GCACCGAGAAGTTCCTGGAGGCCAG
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAA-GTTGCACCGAGAAGTTCCTGGAGGCCAG
EST: gi|14240632|gb|BG859448.1|BG859448
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|22074089|gb|BQ823292.1|BQ823292
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|22059343|gb|BQ813385.1|BQ813385
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|15368961|gb|BI528387.1|BI528387
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|15372908|gb|BI532334.1|BI532334
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCAAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|7593489|gb|AW707740.1|AW707740
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAA
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAA
EST: gi|14238251|gb|BG857067.1|BG857067
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|161817773|gb|FC100010.1|FC100010
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTGCCGCTGATGAACATCAAGAGTTGCACCGAGAAGTTCCTGGAGGCGAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|8513586|gb|BE121481.1|BE121481
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCG
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCG
EST: gi|161817687|gb|FC099976.1|FC099976
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTGCCGCTGATGAACATCAAGAGTTGCACCGAGAAGTTCCTGGAGGCGAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
EST: gi|7615363|gb|AW720809.1|AW720809
EST:     TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAG                         GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC
genomic: TCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAACATCCCCAGgtatgcgctg ... cccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgcaatcatcagctttgctaatcttcatgcatactacaacaatcccactgcagGTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG
                 tgctaat  putative branch site (score: 2)
                                            tcccact  putative PPT
                    taatctt  TA-rich tract