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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggcgggccgcatccccgtgtcctaggctgggcccagcttccagccgtagtgttggtcgctttgcagcacacggcgtgccctcgcttcgcactgtatgattgttgtttccctgactctcaatcttggcacgtctccccgctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCACTACGCCACCCCCGTGGACATGTGGTCCGTCGGCTGCATCTTCGCTGAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97594
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO97594 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: EFJ32755 (Selaginella moellendorffii), 3'ss of exon 4
gtgtggcgggccgcatccccgtgtcctaggctgggcccagcttccagccgtagtgttggtcgctttgcagcacacggcgtgccctcgcttcgcactgtatgattgttgtttccctgactctcaatcttggcacgtctccccgctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCACTACGCCACCCCCGTGGACATGTGGTCCGTCGGCTGCATCTTCGCTGAGC
                                                                                      | ||      | ||  || |   |||  |   |  |   |||   ||     |    |      ||||||| || || |||||| | || || ||| | || || || ||  | |||||| ||  |||||||||||||||||||||||| || || || |      
--------------------------------------------------------------------------------------gtttgctcacgcatagttatctcttcttttttttccctgctt---acactctcttatt-----tagATTGTTACGCTCTGGTACAGAGCTCCGGAGATACTTCTCGGAGCTTCACACTACTCCGTCCCCGTGGACATGTGGTCCGTCGGGTGTATATTTG------

upper sequence: EDO97594 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: EFJ20675 (Selaginella moellendorffii), 3'ss of exon 4
gtgtggcgggccgcatccccgtgtcctaggctgggcccagcttccagccgtagtgttggtcgctttgcagcacacggcgtgccctcgcttcgcactgtatgattgttgtttccctgactctcaatcttggcacgtctccccgctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCACTACGCCACCCCCGTGGACATGTGGTCCGTCGGCTGCATCTTCGCTGAGC
                                                                                      | ||      | ||  || |  | | | |   | ||  |  |  ||| ||||  |  |      ||||||| || || |||||| | || || ||| | || || || ||  | |||||| ||  |||||||||||||||||||||||| || || || |      
--------------------------------------------------------------------------------------gtttgctcacgcatagttatc-tcttcttttttttccctgcttacac-tctcttcttt------agATTGTTACGCTCTGGTACAGAGCTCCGGAGATACTTCTCGGAGCTTCACACTACTCCGTCCCCGTGGACATGTGGTCCGTCGGGTGTATATTTG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692631|gb|BI716936.1|BI716936
EST:     TGGGCCTGGGCCGCCACTTCAGCGTGCCCCTCAAGAGCTACACGCACGAG                         ATTGTGACCCTATGGTACCGCGCGCCCGAGGTGC
genomic: TGGGCCTGGGCCGCCACTTCAGCGTGCCCCTCAAGAGCTACACGCACGAGgtgtggcggg ... ctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGC
EST: gi|23360028|gb|BU647848.1|BU647848
EST:     TGGGCCTGGGCCGCCACTTCAGCGTGCCCCTCAAGAGCTACACGCACGAG                         ATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCAC
genomic: TGGGCCTGGGCCGCCACTTCAGCGTGCCCCTCAAGAGCTACACGCACGAGgtgtggcggg ... ctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCAC
EST: gi|23361675|gb|BU649495.1|BU649495
EST:     TGGGCCTGGGCCGCCACTTCAGCGTGCCCCTCAAGAGCTACACGCACGAG                         ATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCAC
genomic: TGGGCCTGGGCCGCCACTTCAGCGTGCCCCTCAAGAGCTACACGCACGAGgtgtggcggg ... ctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgattgttgtttccctgactctcaatcttggcacgtctccccgctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCACTACGCCACCCCCGTGGACATGTGGTCCGTCGGCTGCATCTTCGCTGAGC
              ccctgac  putative branch site (score: 3)
                                     tctccccgct  putative PPT