1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcggggagggaggggcaggcgctcgtcgggcgaagaagaagaatctgcgcaggaaacggttttacttgaagcctcgggtgcagcgctggagctgtggctgattacagttacaaccgataactgatcccctcctcgcatgtgtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG
species | Chlamydomonas reinhardtii |
transcript | EDO97521 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|10191248|gb|BE761324.1|BE761324
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161819180|gb|FC109867.1|FC109867
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161806371|gb|FC088996.1|FC088996
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161812526|gb|FC099421.1|FC099421
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161814252|gb|FC102057.1|FC102057
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|16071827|gb|BI873823.1|BI873823
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161792543|gb|FC081797.1|FC081797
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161803217|gb|FC093236.1|FC093236
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|7615600|gb|AW721040.1|AW721040
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161816281|gb|FC102117.1|FC102117
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|9210231|gb|BE337146.1|BE337146
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161818086|gb|FC102260.1|FC102260
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|6541678|gb|AV387462.1|AV387462
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: CGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|9460442|gb|BE453233.1|BE453233
genomic: CGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTTCTGGGCCTGGAGEST: gi|9458422|gb|BE452232.1|BE452232
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161792947|gb|FC081265.1|FC081265
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|7593234|gb|AW707373.1|AW707373
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|14234425|gb|BG853241.1|BG853241
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCCAGTACTTCCTGGGCCTGGAEST: gi|22070078|gb|BQ819511.1|BQ819511
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAG-CAGTACTTCCTGGGCCTGGA
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161799673|gb|FC085207.1|FC085207
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161807653|gb|FC099806.1|FC099806
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161797639|gb|FC083696.1|FC083696
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161819941|gb|FC107508.1|FC107508
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|10790625|gb|AV627991.1|AV627991
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCEST: gi|7686823|gb|AW757471.1|AW757471
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGC
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|7687556|gb|AW758202.1|AW758202
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTEST: gi|6547401|gb|AV393185.1|AV393185
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACT
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161792483|gb|FC080411.1|FC080411
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|16071987|gb|BI873983.1|BI873983
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|7426764|gb|AW660937.1|AW660937
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACNCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGEST: gi|161813946|gb|FC105586.1|FC105586
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
ggctgattacagttacaaccgataactgatcccctcctcgcatgtgtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG
aactgat putative branch site (score: 3)
tgtctct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggggagggaggggcaggcgctcgtcgggcgaagaagaagaatctgcgcaggaaacggttttacttgaagcctcgggtgcagcgctggagctgtggctgattacagttacaaccgataactgatcccctcctcgcatgtgtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG