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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgacctgggtcgtgggagggctggggaactagcactgatgtacggcagaaccagtgtgctacaaggacaatgttcagtggcctgggcatcggagcttcaaggatacgcgctatgccggggtcgtgtagctaacggcgtgggtacccggaatgctggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAGTTTGTGTCGCGCAAGCAGTGGGTTATCACGGGCTCGGATGACATGTTCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96917
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466389|gb|BP094302.1|BP094302
EST:     TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAG                         ACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
genomic: TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAGgcacgacctg ... ggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
EST: gi|10787062|gb|AV643734.1|AV643734
EST:     GGCCAACCTGTACAACTGGCAACGTTTACATCTGGAACTACCTGGACCAG                         ACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
genomic: GGCCAACCTGTACAAC-GGCAACGTTTACATCTGGAACTACCTGGACCAGgcacgacctg ... ggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
EST: gi|49466087|gb|BP094000.1|BP094000
EST:     TGGCCAACCTGTTCAACGGCAACGTTTACATCTGGAACTACCTGGACCAG                         ACTCTGGTGAAGTCGTTCGAGGTGACGGAGCT
genomic: TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAGgcacgacctg ... ggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCT
EST: gi|49466470|gb|BP094383.1|BP094383
EST:     TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAG                         ACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
genomic: TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAGgcacgacctg ... ggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
EST: gi|23363971|gb|BU651791.1|BU651791
EST:     TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAG                         ACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
genomic: TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAGgcacgacctg ... ggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
EST: gi|49469394|gb|BP097255.1|BP097255
EST:     TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAG                         ACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
genomic: TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAGgcacgacctg ... ggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
EST: gi|49468483|gb|BP096344.1|BP096344
EST:     TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAG                         ACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG
genomic: TGGCCAACCTGTACAACGGCAACGTTTACATCTGGAACTACCTGGACCAGgcacgacctg ... ggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgccggggtcgtgtagctaacggcgtgggtacccggaatgctggctgtgcagACTCTGGTGAAGTCGTTCGAGGTGACGGAGCTGCCCGTGCGCGCGGCCAAGTTTGTGTCGCGCAAGCAGTGGGTTATCACGGGCTCGGATGACATGTTCA
                 agctaac  putative branch site (score: 2)