1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccctcccaagccgcacgccctctgctatcagtcccttccccacacttactccctgcacccgcccacccacccaccccttctgccgtgcctgcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCAGCAACGTGCCGCTGCACCTGCGCAAGGTGCTGGACGCGCTGCCCACGG
species | Chlamydomonas reinhardtii |
transcript | EDO96721 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAG GTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCEST: gi|16436775|gb|BM001995.1|BM001995
genomic: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAGgtgcgacccg ... gcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGC
EST: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAG GTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCEST: gi|23359352|gb|BU647172.1|BU647172
genomic: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAGgtgcgacccg ... gcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGC
EST: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAG GTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCEST: gi|10789391|gb|AV645120.1|AV645120
genomic: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAGgtgcgacccg ... gcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGC
EST: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAG GTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCEST: gi|239841885|gb|GR283742.1|GR283742
genomic: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAGgtgcgacccg ... gcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGC
EST: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAG GTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCEST: gi|23365346|gb|BU653166.1|BU653166
genomic: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAGgtgcgacccg ... gcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGC
EST: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAG GTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGC
genomic: GCGGCCAGCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAGgtgcgacccg ... gcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGC
ttactccctgcacccgcccacccacccaccccttctgccgtgcctgcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCAGCAACGTGCCGCTGCACCTGCGCAAGGTGCTGGACGCGCTGCCCACGG
cacttac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctcccaagccgcacgccctctgctatcagtcccttccccacacttactccctgcacccgcccacccacccaccccttctgccgtgcctgcgctcgcagGTGCCCACCAGCAGCCAGGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCAGCAACGTGCCGCTGCACCTGCGCAAGGTGCTGGACGCGCTGCCCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - agccgca
- - - - - - - - - - - - - - - - - - - cccacac
- - - - - - - - - - - - - - - - - - - - - - - -actccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcacccg