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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgtgcctggctcgcagcaaaggaagttgcgaggaaagccgtgctcttgccgacctcacgtatttgcttccccctgcccttctcctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCAGCTCTAACGTGAGCGGGTCAGCCTTCGCTGCACCGGCGGCAGGTCCCAT

Basic information

species Chlamydomonas reinhardtii
transcript EDO96606
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15703523|gb|BI727828.1|BI727828
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAG
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAG
EST: gi|161818115|gb|FC102276.1|FC102276
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|22071732|gb|BQ821070.1|BQ821070
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|15696879|gb|BI721184.1|BI721184
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|15693063|gb|BI717368.1|BI717368
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|10777709|gb|AV634389.1|AV634389
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|9210419|gb|BE337334.1|BE337334
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|23362385|gb|BU650205.1|BU650205
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|15370853|gb|BI530279.1|BI530279
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|15698171|gb|BI722476.1|BI722476
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|15694256|gb|BI718561.1|BI718561
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|10128238|gb|BE726942.1|BE726942
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|23367161|gb|BU654980.1|BU654980
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|14231278|gb|BG850094.1|BG850094
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|16428820|gb|BI994046.1|BI994046
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|23360990|gb|BU648810.1|BU648810
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|15696115|gb|BI720420.1|BI720420
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
EST: gi|14231284|gb|BG850100.1|BG850100
EST:     GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACG                         AGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA
genomic: GCCCATGTACAACAACATCCCCGGCCTGGTCAAGAAGTCCATATGGGACGgtgagcgtgc ... ctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgctcttgccgacctcacgtatttgcttccccctgcccttctcctattcacagAGGAGCCAGCGGCCTCAGCGCCTGCTGCAGCTGGCCCACCGGCATTTGCCAGCTCTAACGTGAGCGGGTCAGCCTTCGCTGCACCGGCGGCAGGTCCCAT
             acctcac  putative branch site (score: 3)
                     tatttgcttccccctg  CT-rich tract
                     tattt  TA-rich tract