1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtctcgcgcccgtgctgtccctcagattacttgtaaactcttgctggagctagcaacgctaatgggcaatgcttgtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
species | Chlamydomonas reinhardtii |
transcript | EDO96600 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|49467422|gb|BP095335.1|BP095335
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|10778347|gb|AV635027.1|AV635027
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|15694356|gb|BI718661.1|BI718661
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCTAGCTEST: gi|161796597|gb|FC082914.1|FC082914
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTGGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|10771327|gb|AV622150.1|AV622150
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|22068890|gb|BQ818649.1|BQ818649
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: ACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|8933046|gb|BE227807.1|BE227807
genomic: ACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|10776378|gb|AV633058.1|AV633058
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|10778045|gb|AV634725.1|AV634725
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|22063901|gb|BQ815490.1|BQ815490
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCTAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|16432961|gb|BI998187.1|BI998187
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|6546326|gb|AV392110.1|AV392110
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|10777853|gb|AV634533.1|AV634533
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|22073092|gb|BQ822430.1|BQ822430
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGCCGAACTCGATGGGEST: gi|15697029|gb|BI721334.1|BI721334
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGG
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATTEST: gi|16430540|gb|BI995766.1|BI995766
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
cttgtaaactcttgctggagctagcaacgctaatgggcaatgcttgtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
cgctaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctcgcgcccgtgctgtccctcagattacttgtaaactcttgctggagctagcaacgctaatgggcaatgcttgtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT