1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgggttgatcctctgacaagtgccactgctctgcagcaattgcgtgcctggtgtacgtggggacgttcctggggacgctcctgtcctacctgctctgctagttgaaatgctccgcgatactccgaggtacaataagtcctgacgatctctgtgtttggtcaattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACTCGCTGCAGGGCGCGAACCTGTCGTAAGCAGTCTGCCCAGGGCATGACTG
species | Chlamydomonas reinhardtii |
transcript | EDO96591 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCG GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGACGAGCTGGCCATCAACTEST: gi|7545749|gb|AW676237.1|AW676237
genomic: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: CGACCCCGCT-GCTTCAACATCATC-ATGTTGCCG GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACTEST: gi|23366797|gb|BU654616.1|BU654616
genomic: CGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCG GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACTEST: gi|23366796|gb|BU654615.1|BU654615
genomic: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: TCATCGATG-TGCCG GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACTEST: gi|7687571|gb|AW758217.1|AW758217
genomic: TCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCG GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
genomic: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
cgatactccgaggtacaataagtcctgacgatctctgtgtttggtcaattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACTCGCTGCAGGGCGCGAACCTGTCGTAAGCAGTCTGCCCAGGGCATGACTG
tcctgac putative branch site (score: 2)
tacaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttgatcctctgacaagtgccactgctctgcagcaattgcgtgcctggtgtacgtggggacgttcctggggacgctcctgtcctacctgctctgctagttgaaatgctccgcgatactccgaggtacaataagtcctgacgatctctgtgtttggtcaattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACTCGCTGCAGGGCGCGAACCTGTCGTAAGCAGTCTGCCCAGGGCATGACTG
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