1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccttgcccctgcctcccgtacacctctatgatgtcggacagaacctgccccagtaccgccgtcaacgtccaacacacacactcccctccaatatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGACGAGCGGCTCAGCGGCTACATCACTGGCCAGCACTTCGTGGCGGACGG
species | Chlamydomonas reinhardtii |
transcript | EDP09952 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|239841225|gb|GR283082.1|GR283082
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|239841226|gb|GR283083.1|GR283083
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|239841230|gb|GR283087.1|GR283087
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|239841229|gb|GR283086.1|GR283086
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|23362511|gb|BU650331.1|BU650331
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|239841227|gb|GR283084.1|GR283084
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|239841228|gb|GR283085.1|GR283085
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGEST: gi|239841231|gb|GR283088.1|GR283088
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
EST: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCG GCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
genomic: GGGCGGCGCCGACCCCATCACCACGGAGCAGCACCAGTGGCAGTGGACCGgtgggctcgg ... atatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGG
tgccccagtaccgccgtcaacgtccaacacacacactcccctccaatatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGACGAGCGGCTCAGCGGCTACATCACTGGCCAGCACTTCGTGGCGGACGG
aatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgcccctgcctcccgtacacctctatgatgtcggacagaacctgccccagtaccgccgtcaacgtccaacacacacactcccctccaatatgcacagGCCGCGTGGGCCGCCCCACCGACGTCTCCGAGCTGGTGGCCTTCCTAGCGGACGAGCGGCTCAGCGGCTACATCACTGGCCAGCACTTCGTGGCGGACGG
- - - - - - - - -gtacacc
- - - - - - - - - - - - tctatga
- - - - - - - - - - - - - - - - - -ggacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgtcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca