1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagaggcacggctcaccggcgggcgggcagagagtcactcgcccaagcaatgcgcttgcgcccctcgcaactttagcacgcggcatggcatcttacaccgtgcgtgggtgctgcctgccgccatcccgtgttcgcgtgcctcacccaacagGGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACGCCGGGCCGCCTTATCGACATGCTGGACAGCCGCATCACCAACCTGCGGC
species | Chlamydomonas reinhardtii |
transcript | EDP09760 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAG GGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATTGTGATCGCCACGEST: gi|161790886|gb|FC080239.1|FC080239
genomic: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAGgtgagaggca ... cacccaacagGGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACG
EST: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAG GGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACGEST: gi|8933238|gb|BE227999.1|BE227999
genomic: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAGgtgagaggca ... cacccaacagGGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACG
EST: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAG GGCCCCCAGGCGCGCGACCTGCGEST: gi|161803944|gb|FC093859.1|FC093859
genomic: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAGgtgagaggca ... cacccaacagGGCCCCCAGGCGCGCGACCTGCG
EST: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAG GGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACG
genomic: GCGCCTCCAGCCGCATCAAGAACACCGTCGTGTACGGCGGTGCGCCCAAGgtgagaggca ... cacccaacagGGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACG
accgtgcgtgggtgctgcctgccgccatcccgtgttcgcgtgcctcacccaacagGGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACGCCGGGCCGCCTTATCGACATGCTGGACAGCCGCATCACCAACCTGCGGC
gcctcac putative branch site (score: 3)
cctcaccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaggcacggctcaccggcgggcgggcagagagtcactcgcccaagcaatgcgcttgcgcccctcgcaactttagcacgcggcatggcatcttacaccgtgcgtgggtgctgcctgccgccatcccgtgttcgcgtgcctcacccaacagGGCCCCCAGGCGCGCGACCTGCGCGGCGGCGTGGAGATCGTCATTGCCACGCCGGGCCGCCTTATCGACATGCTGGACAGCCGCATCACCAACCTGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA