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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgccgcagcgcaagcgggccccgcggccgctatctcggcatcgtcgccgaaagttgggcccaaccgccccgcaccggttcacatcaatgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09753
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP09753 (Chlamydomonas reinhardtii), 3'ss of exon 3
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttgccgcagcgcaagcgggccccgcggccgc-tatctcggcatcgtcgccgaaagttgggcccaaccgccccgca---ccggttcacatcaatgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCG
|| |||| |    |    ||  |  |    ||  |  |   |  |   | || || ||  ||| |     |      |     ||  ||   ||        ||||||| || ||||| || || || || || |||||||||||||||||||||||||
gtgagtt-caatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcagGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23365360|gb|BU653180.1|BU653180
EST:     CCTTCCATCGGATTCGTAAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGATGTCATCAATCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|10788266|gb|AV644938.1|AV644938
EST:     CCTTCCATCGGATTCGTAAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGATGTCATCAATCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|8400882|gb|BE056516.1|BE056516
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGATGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|49466669|gb|BP094582.1|BP094582
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|16071742|gb|BI873738.1|BI873738
EST:     CCTTCCATCGGATTCGNGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|22068907|gb|BQ818660.1|BQ818660
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|15699843|gb|BI724148.1|BI724148
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT