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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacactgaggctgcgttggatgccccggggtgggcccggggggtggccagggccagggcttagtgtagactaacacacacacacacacgggggctggaaaccgccgcctgtcacatcccccgtaccgtgtaccagggaaagcaagcggactgcctctatccattccccattcgcggtgcgtgcagGCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGCGGAGTCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09706
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16072107|gb|BI874103.1|BI874103
EST:     GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG                         GCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
genomic: GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATGgtgagacact ... gtgcgtgcagGCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
EST: gi|16071500|gb|BI873496.1|BI873496
EST:     GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG                         GCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
genomic: GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATGgtgagacact ... gtgcgtgcagGCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
EST: gi|22070532|gb|BQ819865.1|BQ819865
EST:     GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG                         GCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
genomic: GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATGgtgagacact ... gtgcgtgcagGCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
EST: gi|22070531|gb|BQ819864.1|BQ819864
EST:     GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG                         GCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
genomic: GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATGgtgagacact ... gtgcgtgcagGCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
EST: gi|22076771|gb|BQ825547.1|BQ825547
EST:     GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATG                         GCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC
genomic: GACACCGCCGGTAGGGCGGGTGTCAAGGTGGTGTGTCTCCAAGAGGCATGgtgagacact ... gtgcgtgcagGCACATGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGC