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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggagtaacacggaagtgcagacatgcagctccagcgctggggacgggctgcacagttgcaaggcgaaatcatctccaagcttgcttcagggtgacctggctcaaggccgtcccgcacttctgacctacttgaccgtttcgtacacgcgctgtgccttcctccaccctctcctgccgcttctgcacagCCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGCTACCAGATGTACCTGACGGAGAACTACCAGCAGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09638
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14227690|gb|BG846506.1|BG846506
EST:     CCTTCCTGGGGCCCAAGGACGCGCAGAAGGGGCAGTACTACGTGCCGCAG                         CCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGC
genomic: CCTTCCTGGGGCCCAAGGACGCGCAGAAGGGGCAGTACTACGTGCCGCAGgtaggagtaa ... ttctgcacagCCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGC
EST: gi|23360227|gb|BU648047.1|BU648047
EST:     CCTTCCTGGGGCCCAAGGACGCGCAGAAGGGGCAGTACTACGTGCCGCAG                         CCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGC
genomic: CCTTCCTGGGGCCCAAGGACGCGCAGAAGGGGCAGTACTACGTGCCGCAGgtaggagtaa ... ttctgcacagCCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGC
EST: gi|14227693|gb|BG846509.1|BG846509
EST:     CCTTCCTGGGGCCCAAGGACGCGCAGAAGGGGCAGTACTACGTGCCGCAG                         CCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGC
genomic: CCTTCCTGGGGCCCAAGGACGCGCAGAAGGGGCAGTACTACGTGCCGCAGgtaggagtaa ... ttctgcacagCCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtttcgtacacgcgctgtgccttcctccaccctctcctgccgcttctgcacagCCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGCTACCAGATGTACCTGACGGAGAACTACCAGCAGCAG
                   tgccttcctccaccct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggagtaacacggaagtgcagacatgcagctccagcgctggggacgggctgcacagttgcaaggcgaaatcatctccaagcttgcttcagggtgacctggctcaaggccgtcccgcacttctgacctacttgaccgtttcgtacacgcgctgtgccttcctccaccctctcctgccgcttctgcacagCCCCGCTACCGGCAGTTCCTGGAGTCGTACGTGTCCGCGCTGGAGGACGGCTACCAGATGTACCTGACGGAGAACTACCAGCAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
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