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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgggtggggtggggctgggtgggtggctgcaacgcgtggctggtgcaaggggtgcgcctggctggtgctgcgggtgggggccggccgaaaccccacagtgcatcacaaacttcgacttcgtaatctcacgcggggtgttctttcgctggccctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGACCTTCCGCCGCAGCGGCACCAGGTGCGGCTGGACATGGCGCAGGACTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09483
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368870|gb|BI528296.1|BI528296
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|16436311|gb|BM001531.1|BM001531
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|15703809|gb|BI728114.1|BI728114
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGC
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGC
EST: gi|14242106|gb|BG860922.1|BG860922
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|14235350|gb|BG854166.1|BG854166
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|16434124|gb|BI999350.1|BI999350
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|23361597|gb|BU649417.1|BU649417
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|23361974|gb|BU649810.1|BU649810
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|23363222|gb|BU651042.1|BU651042
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
EST: gi|23361687|gb|BU649507.1|BU649507
EST:     GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCG                         TCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA
genomic: GAGTCCTTCGAGTCGTGCAAGGCGTGGTTTGAGCTGCTCAAATCGGCGCGgtaggttggg ... ctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttcgacttcgtaatctcacgcggggtgttctttcgctggccctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGACCTTCCGCCGCAGCGGCACCAGGTGCGGCTGGACATGGCGCAGGACTGG
                atctcac  putative branch site (score: 3)
                                           ccctcttcgt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggttgggtggggtggggctgggtgggtggctgcaacgcgtggctggtgcaaggggtgcgcctggctggtgctgcgggtgggggccggccgaaaccccacagtgcatcacaaacttcgacttcgtaatctcacgcggggtgttctttcgctggccctcttcgtagTCCCGACCGCGAGCGGCCGCTGCGCGCCGTGCTGGTGGCGAACAAGACGGACCTTCCGCCGCAGCGGCACCAGGTGCGGCTGGACATGGCGCAGGACTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA