1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgccttggtcaatacgcgcggatgggtgcggggcacagcaaccccatgagtgcgcacccgcaattctgtgtccgccccttatgccacgtgtcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACGTACCGCTTCATCGAGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGC
species | Chlamydomonas reinhardtii |
transcript | EDP09379 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACGEST: gi|16072325|gb|BI874321.1|BI874321
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACGEST: gi|15697133|gb|BI721438.1|BI721438
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTEST: gi|14229549|gb|BG848365.1|BG848365
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTT
EST: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACGEST: gi|10778288|gb|AV634968.1|AV634968
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTCCGGCAGCTGCCGGTGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTAATCATCACGEST: gi|8932577|gb|BE227338.1|BE227338
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG CGCCGGCTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGGGATCATCACGEST: gi|10778289|gb|AV634969.1|AV634969
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTCCGGCAGCTGCCGGTGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTAATCATCACGEST: gi|15692624|gb|BI716929.1|BI716929
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACGEST: gi|10774326|gb|AV625149.1|AV625149
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTCCGGCAGCTGCCGGTGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTAATCATCACGEST: gi|16433071|gb|BI998297.1|BI998297
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
atgagtgcgcacccgcaattctgtgtccgccccttatgccacgtgtcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACGTACCGCTTCATCGAGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGC
tgtcctcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgccttggtcaatacgcgcggatgggtgcggggcacagcaaccccatgagtgcgcacccgcaattctgtgtccgccccttatgccacgtgtcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACGTACCGCTTCATCGAGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - -atacgcg
- - - - - - - - - - -atgggtg
- - - - - - - - - - - - - - - gggcaca
- - - - - - - - - - - - - - - - - - - -aacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtg