1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccacgatgactagcggcaacgcctgtgccccggttgcgtctaaccaccctcaaccccaccacacccatcccaccgccctcgccaccgcgcccaccctcagGAGTACCTGCCCATCGGCGGCCTGCGCGACTTCATCTCCGAGTCGGTCAAGCTGGCGTACGGCGACAACGCGGCGGTGCTGGCGGAGGGCCAGGTGGCGG
species | Chlamydomonas reinhardtii |
transcript | EDP08586 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGACGCTGTGCGGGAGGCGGAGCGCCGCGTGGCGGGCAGCCACTTCATG GAGTACCTGCCCATCGGCGGCCTGCGCGACTTCEST: gi|15695845|gb|BI720150.1|BI720150
genomic: TGGACGCTGTGCGGGAGGCGGAGCGCCGCGTGGCGGGCAGCCACTTCATGgtgcgcgtgt ... ccaccctcagGAGTACCTGCCCATCGGCGGCCTGCGCGACTTC
EST: TGGACGCTGTGCGGGAGGCGGAGCGCCGCGTGGCGGGCAGCCACTTCATG GAGTACCTGCCCATCGGCGGCCTGCGCGACTTCATCTCCGAGTCGGTCAAGEST: gi|10785973|gb|AV642645.1|AV642645
genomic: TGGACGCTGTGCGGGAGGCGGAGCGCCGCGTGGCGGGCAGCCACTTCATGgtgcgcgtgt ... ccaccctcagGAGTACCTGCCCATCGGCGGCCTGCGCGACTTCATCTCCGAGTCGGTCAAG
EST: GGACGCTGTGCGGGAGGCGGAGCGCCGCCGTGGCGGGCAGCCACTTCATG GAGTACCTGCCCATCGGCGGCCTGCGCGACTTCATCTCCGAGTCGGTCACG
genomic: GGACGCTGTGCGGGAGGCGGAGCGCCGC-GTGGCGGGCAGCCACTTCATGgtgcgcgtgt ... ccaccctcagGAGTACCTGCCCATCGGCGGCCTGCGCGACTTCATCTCCGAGTCGGTCAAG
accctcaaccccaccacacccatcccaccgccctcgccaccgcgcccaccctcagGAGTACCTGCCCATCGGCGGCCTGCGCGACTTCATCTCCGAGTCGGTCAAGCTGGCGTACGGCGACAACGCGGCGGTGCTGGCGGAGGGCCAGGTGGCGG
cccaccctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacgatgactagcggcaacgcctgtgccccggttgcgtctaaccaccctcaaccccaccacacccatcccaccgccctcgccaccgcgcccaccctcagGAGTACCTGCCCATCGGCGGCCTGCGCGACTTCATCTCCGAGTCGGTCAAGCTGGCGTACGGCGACAACGCGGCGGTGCTGGCGGAGGGCCAGGTGGCGG
- - - - - - - - - - gcctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - -aacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaccca