Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttggcgctttagttcggctgggcggcatgcacaggggtagcaagactaataagcgacgtgtgaaggcgatggcggcacctgccgccagagcagcaaagcgcggtgcctctacacggctgtttcagggacgtggacttagcccttccttgttgtggtaactgcagGCGGCGCTGCGGGAAGAGGAGCGGCGGATGGCTGAGGCGGCCAAGGCGGAGAGCGTGACTTCGTTCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP08070
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15694515|gb|BI718820.1|BI718820
EST:     CCAGCAAGCATGTGAAGTACGTGCGGAACCTGGAGCAGGAGAACCGTGAG                         GCGGCGCTGCGGGAAGAGGAGCGGCGGATGGCTGAGGCGGCCAAGGCGGAG
genomic: CCAGCAAGCATGTGAAGTACGTGCGGAACCTGGAGCAGGAGAACCGTGAGgtgagttggc ... gtaactgcagGCGGCGCTGCGGGAAGAGGAGCGGCGGATGGCTGAGGCGGCCAAGGCGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacacggctgtttcagggacgtggacttagcccttccttgttgtggtaactgcagGCGGCGCTGCGGGAAGAGGAGCGGCGGATGGCTGAGGCGGCCAAGGCGGAGAGCGTGACTTCGTTCAA
                                           tggtaac  putative branch site (score: 2)