1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcctgccgccgcccatgctttgctcccagcagccagtccatagtgtcacccctcacaagctgctgttgcccctcatctctgtcgccatgcacacccacagCTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGGCCCGCTTTGACGACTCCATTGTGGCGGTGGAGCCCGACCCGCTCGAGTC
species | Chlamydomonas reinhardtii |
transcript | EDP07876 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG CTGAGGGCGTGEST: gi|23366360|gb|BU654180.1|BU654180
genomic: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGGgtaagtaagc ... acacccacagCTGAGGGCGTG
EST: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG CTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGGEST: gi|22072783|gb|BQ822121.1|BQ822121
genomic: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGGgtaagtaagc ... acacccacagCTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGG
EST: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG CTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGGEST: gi|14228630|gb|BG847446.1|BG847446
genomic: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGGgtaagtaagc ... acacccacagCTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGG
EST: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG CTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGGEST: gi|14225123|gb|BG843939.1|BG843939
genomic: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGGgtaagtaagc ... acacccacagCTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGG
EST: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGG CTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGGEST: gi|7426840|gb|AW661013.1|AW661013
genomic: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGGgtaagtaagc ... acacccacagCTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGG
EST: CTCAGATGGNGACACGCTGAAGGACATTGNGATAGAAGGTGTGCACATGG CTGAGGGCGTGGCGCTGC
genomic: CTCAGATGGGGACACGCTGAAGGACATTGGGATAGAAGGTGTGCACATGGgtaagtaagc ... acacccacagCTGAGGGCGTGGCGCTGC
tcacccctcacaagctgctgttgcccctcatctctgtcgccatgcacacccacagCTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGGCCCGCTTTGACGACTCCATTGTGGCGGTGGAGCCCGACCCGCTCGAGTC
ccctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctgccgccgcccatgctttgctcccagcagccagtccatagtgtcacccctcacaagctgctgttgcccctcatctctgtcgccatgcacacccacagCTGAGGGCGTGGCGCTGCCCTCCATTACCTTCCACTACGATTTCGCGGCGGCCCGCTTTGACGACTCCATTGTGGCGGTGGAGCCCGACCCGCTCGAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - -cccatgc
- - - - - - - - - - - - - - - - - - - - - - gtcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - tcacaag