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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggcagggaggagggcagtcatgcgggggcgcttgcggcagcaccgcacagggctgtggaggatggcgcgcgctcgggagggcaccagcgtcctcctcaggcaccgaatgagaatgttacgcatggcgccatgttggcctccgcagACCGCAATTGATGGCGAGGGGCTTGACCGAGTGGCGGTGCTGGTGACGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07809
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49464111|gb|BP092024.1|BP092024
EST:     GCTCCAGCGATGATGGCGAGCCAGGCGGCACAGCGGGGAAGCCCATCCAG                         ACCGCAATTGATGGCGAGGGGCTTGAACGAGTGGCGGTGCTGGTGACGCG
genomic: GCTCCAGCGATGATGGCGAGCCAGGCGGCACAGCGGGGAAGCCCATCCAGgtacggcagg ... gcctccgcagACCGCAATTGATGGCGAGGGGCTTGACCGAGTGGCGGTGCTGGTGACGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcctcaggcaccgaatgagaatgttacgcatggcgccatgttggcctccgcagACCGCAATTGATGGCGAGGGGCTTGACCGAGTGGCGGTGCTGGTGACGCG
                                              cctccgc  CT-rich tract
                     aatgtta  TA-rich tract