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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcggtacggcagagcgcggctgtggaacctggggcggctgcagctgtgggaggcgccggcaggggaaatgggcagctgggattctcgcgccctcgccgtatcctcccattcatctacccccgcacatacatccatccaaccggccatggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCACGTGTCGTTCGTGGACTGCCCCGGCCACGATATTCTGATGGCTACCATGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP07730
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783620|gb|AV640292.1|AV640292
EST:     CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG                         GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGT
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGT
EST: gi|14229768|gb|BG848584.1|BG848584
EST:     CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG                         GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
EST: gi|10786874|gb|AV643546.1|AV643546
EST:     CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG                         GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCA
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCA
EST: gi|14229769|gb|BG848585.1|BG848585
EST:     CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG                         GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
EST: gi|10780657|gb|AV637337.1|AV637337
EST:     CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG                         GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
EST: gi|10793204|gb|AV630570.1|AV630570
EST:     CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG                         GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGT
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGT
EST: gi|14238988|gb|BG857804.1|BG857804
EST:     CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG                         GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC