1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aggtctttgatgcccgacacgcgcttgcagtcgtacaaagccgcaagttcatctgtaacgagtgtcatccccttgcttcacatcgttgatcttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTATCAGCACCCGAGTACATCAATAAGCTGTATGACTGGATAGAGGAGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP07654 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAG TACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTAEST: gi|16072035|gb|BI874015.1|BI874015
genomic: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgc ... cttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
EST: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAG TACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTAEST: gi|9028072|gb|BE238112.1|BE238112
genomic: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgc ... cttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
EST: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAG TACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
genomic: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgc ... cttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtctttgatgcccgacacgcgcttgcagtcgtacaaagccgcaagttcatctgtaacgagtgtcatccccttgcttcacatcgttgatcttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTATCAGCACCCGAGTACATCAATAAGCTGTATGACTGGATAGAGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- gtctttg
- - - - - - - - -cacgcgc
- - - - - - - - - - - - - - - - - acaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - atctgta