1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcctcctcgcactgcttctatctccttgtcctcgcgctccttgtccgctccttcgccgcctgccgccccccatcccgctcactggcgccccgcacctcagCAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTGCCTGCTGTCCAGCCAGACGCACTACGAGACGCCGCTGG
species | Chlamydomonas reinhardtii |
transcript | EDP07544 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCGGACACGTGATGGCACACGCCTACGCGCACATCAACCCAGCCAACTT CAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTGEST: gi|23360380|gb|BU648200.1|BU648200
genomic: TGCGGACACGTGATGGCACACGCCTACGCGCACATCAACCCAGCCAACTTgtgagtgtgc ... cgcacctcagCAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTG
EST: GCACATCAACCCAGCCAACTT CAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTGEST: gi|10769136|gb|AV619961.1|AV619961
genomic: GCACATCAACCCAGCCAACTTgtgagtgtgc ... cgcacctcagCAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTG
EST: TGCGGACACGTGATGGCACACGCCTACGCGCACATCAACCCAGCCAACTT CAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTG
genomic: TGCGGACACGTGATGGCACACGCCTACGCGCACATCAACCCAGCCAACTTgtgagtgtgc ... cgcacctcagCAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTG
cgctccttcgccgcctgccgccccccatcccgctcactggcgccccgcacctcagCAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTGCCTGCTGTCCAGCCAGACGCACTACGAGACGCCGCTGG
cgctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctcctcgcactgcttctatctccttgtcctcgcgctccttgtccgctccttcgccgcctgccgccccccatcccgctcactggcgccccgcacctcagCAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTGCCTGCTGTCCAGCCAGACGCACTACGAGACGCCGCTGG
- - - tcgcact