1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gccgcaggcgcactagccacacatgcaacccgcatgctcgccaccgcatctgcttaacgccctgcacgtgtgcctgccgcttttgtttgtccctccacagCAAACGCCCGACATCACGGACATTCAGCCAGTGCCCGACGCCTTCGTGCCCATGATCGGCATCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP06435 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTCGGACTTCTTCGGCAGCGAGAAGCACTGCCTGGAATACATGCTCTCG CAAACGCCCGACATCACGGACATTCAGCCAGTGCCCGACGCCTTCGTGCCCEST: gi|23366093|gb|BU653913.1|BU653913
genomic: ACTCGGACTTCTTCGGCAGCGAGAAGCACTGCCTGGAATACATGCTCTCGgtgcgtggac ... ccctccacagCAAACGCCCGACATCACGGACATTCAGCCAGTGCCCGACGCCTTCGTGCCC
EST: ACTCGGACTTCTTCGGCAGCGAGAAGCACTGCCTGGAATACATGCTCTCG CAAACGCCCGACATCACGGACATTCAGCCAGTGCCCGACGCCTTCGTGCCC
genomic: ACTCGGACTTCTTCGGCAGCGAGAAGCACTGCCTGGAATACATGCTCTCGgtgcgtggac ... ccctccacagCAAACGCCCGACATCACGGACATTCAGCCAGTGCCCGACGCCTTCGTGCCC
gcatctgcttaacgccctgcacgtgtgcctgccgcttttgtttgtccctccacagCAAACGCCCGACATCACGGACATTCAGCCAGTGCCCGACGCCTTCGTGCCCATGATCGGCATCAAG
gcttaac putative branch site (score: 3)
cttttgtttgtccctc putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgcaggcgcactagccacacatgcaacccgcatgctcgccaccgcatctgcttaacgccctgcacgtgtgcctgccgcttttgtttgtccctccacagCAAACGCCCGACATCACGGACATTCAGCCAGTGCCCGACGCCTTCGTGCCCATGATCGGCATCAAG
- - - - - - - - ccacaca
- - - - - - - - - - - - - -acccgca
- - - - - - - - - - - - - - - - - - - - -caccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtgc