Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggcggtcctcaatatgcttgatgcctagtcaataccggcttccatggggctttggcgctgcgcatttatttgttgttgagcgcacccattgcccgctgctttcctcaccttccctccgtgccttccctccagACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06387
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP06387 (Chlamydomonas reinhardtii), 3'ss of exon 3
lower sequence: LOC_Os01g59730.1 (Oryza sativa), 3'ss of exon 3
------------gtaagtggcggtcctcaatatgcttgatgcctagtcaataccggcttccatggggctttggcgctgc--gcatttatttgttgttgagcgcacccattgcccgctgctttcctcac---cttccctccgtgcct---tccctccagACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCG
             | | |  | |  |   | ||| | | |||   |    | |    || |||     | || |  |||  |||||    ||||  | |    |  | |      |  | |  |  |    ||  ||    ||  |   |   | ||||||| ||||| || |||||||||||||||||||||||||| ||  ||   ||     ||  ||| || |
gtaagattactcttcattcactgaaccacacatgatagctgcaaggct--ttcttttttgcattaatttatgcctgtgcatgcattagcctgtttataatttgattcgtcaatttcaacctctcaaataggctaaccgttatgtgttggttaattcagACAATGTTGATCTTGGCACTGCCTGCGGCAAGTACTACCGAGTGTGCTGTCTCAGTGTCGTCGATCCTG

upper sequence: EDP06387 (Chlamydomonas reinhardtii), 3'ss of exon 3
lower sequence: LOC_Os05g41110.1 (Oryza sativa), 3'ss of exon 3
gtaagtggcggtcctcaatatgcttgatgcctagtcaataccggc-ttccatggggctttggcgctgcgcatttatttgttgttgagcgcacccattgcccgctgctttcctcaccttccctccgtgccttc-cctccagACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCG-------------------------------
              | | | || || || | |    |  |      ||   || |       |  |   ||| ||  |||      |     || |       |    | ||     ||   | |||||||| | | ||||||| ||||| || || ||||||||||||||||||||||| ||  ||   ||   ||||| |||||| |                               
-------------gtaagtttgtttcatccttccgaaccatttatgttttgtgtgatagcatctgtattcatctacatgtcac--ggtttttccgtgatatagtttggtactgtatgtcttactgtgccttcgctttcagACAATGTTGATCTTGGAACTGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGGTTCGTCGCTACCGACATCACTTACATATAT

upper sequence: EDP06387 (Chlamydomonas reinhardtii), 3'ss of exon 3
lower sequence: LOC_Os05g41110.2 (Oryza sativa), 3'ss of exon 3
gtaagtggcggtcctcaatatgcttgatgcctagtcaataccggc-ttccatggggctttggcgctgcgcatttatttgttgttgagcgcacccattgcccgctgctttcctcaccttccctccgtgccttc-cctccagACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCG
              | | | || || || | |    |  |      ||   || |       |  |   ||| ||  |||      |     || |       |    | ||     ||   | |||||||| | | ||||||| ||||| || || ||||||||||||||||||||||| ||  ||   ||   ||||| |||||| |
-------------gtaagtttgtttcatccttccgaaccatttatgttttgtgtgatagcatctgtattcatctacatgtcac--ggtttttccgtgatatagtttggtactgtatgtcttactgtgccttcgctttcagACAATGTTGATCTTGGAACTGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG

upper sequence: EDP06387 (Chlamydomonas reinhardtii), 3'ss of exon 3
lower sequence: GRMZM2G044137_T02 (Zea mays), 3'ss of exon 3
gtaagtggcggtcctcaatatgcttgatgcctagtcaataccggcttccatggggctttggcgctgcgcatttatttgttgttgagcgcacccattgcccgctgct-ttcctcaccttccctccgtgccttccctccagACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCG
                                      ||  |||  || |    ||||   | |   |  ||    | |||     |      ||    |||  | |     |  ||  | |  |     |  | ||||||| ||||| || |||||||||||||||||||||||| | ||  ||   ||    |||| |||||| |
-------------------------------------gtaa-ggccaccttcaccctttcaggattatctattgcaagatgtgttttgatttagttatttgctagtatgtaatatattaacacttttttgacttttcagACAATGTTGATCTTGGCACTGCCTGCGGCAAGTACTACAGGGTGTGCTGCCTCAGTATCATCGACCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcgcacccattgcccgctgctttcctcaccttccctccgtgccttccctccagACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCG
                        tcctcac  putative branch site (score: 2)
              cccgctgctttcctca  CT-rich tract