1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccacaaccacccgcaaccaccacatacacatccacacctgccgccgccctgcaccccaccccaccccaccccacccacacaccacccccgccacttccagGAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCGGAGATGATGAAGCGGCTGCGCACCGACAAGGGCGCCATCAAGTTCGTGC
species | Chlamydomonas reinhardtii |
transcript | EDP06185 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGCCACGTGACGCTTTGTGTGATGAACAACACGGTGCTGTTCTTCCAG GAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCGEST: gi|15697896|gb|BI722201.1|BI722201
genomic: CGGCCACGTGACGCTTTGTGTGATGAACAACACGGTGCTGTTCTTCCAGgtgggcgggt ... ccacttccagGAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCG
EST: CGGCCACGTGACGCTTTGTGTGATGAACAACACGGTGCTGTTCTTCCAG GAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCGEST: gi|15692184|gb|BI716489.1|BI716489
genomic: CGGCCACGTGACGCTTTGTGTGATGAACAACACGGTGCTGTTCTTCCAGgtgggcgggt ... ccacttccagGAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCG
EST: CGGCCACGTGACGCTTTGTGTGATGAACAACACGGTGCTGTTCTTCCAG GAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCG
genomic: CGGCCACGTGACGCTTTGTGTGATGAACAACACGGTGCTGTTCTTCCAGgtgggcgggt ... ccacttccagGAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCG
gccctgcaccccaccccaccccaccccacccacacaccacccccgccacttccagGAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCGGAGATGATGAAGCGGCTGCGCACCGACAAGGGCGCCATCAAGTTCGTGC
cccccgccacttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacaaccacccgcaaccaccacatacacatccacacctgccgccgccctgcaccccaccccaccccaccccacccacacaccacccccgccacttccagGAGCGCGACGGGCCGTGGCTGCCCACGCTGCGCATCCTGCACCAGTACCCGGAGATGATGAAGCGGCTGCGCACCGACAAGGGCGCCATCAAGTTCGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- acaacca
- -caaccac
- - - - - - - - - - - -atacaca
- - - - - - - - - - - - - - - - cacacct
- - - - - - - - - - - - - - - - - - - - - - - - - - accccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccccc