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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcgaaggccttcaagcgaacgcgccgaaaagacagtccgtcactccacgtcagccccagacccgcgccgagcggcttccctagtgtgcattgatatatggcaactcatcgcgtattcggtggcggctatcggggcgtcaatgctgggcggcttgattaagttgttgactttcgttcggatgccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGGATGCACCCAAGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05922
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6550443|gb|AV396227.1|AV396227
EST:     ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAG                         TGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
genomic: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaa ... gccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
EST: gi|10783076|gb|AV639748.1|AV639748
EST:     ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAG                         TGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
genomic: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaa ... gccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
EST: gi|10786272|gb|AV642944.1|AV642944
EST:     ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAG                         TGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
genomic: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaa ... gccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaatgctgggcggcttgattaagttgttgactttcgttcggatgccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGGATGCACCCAAGCAG
                          tgttgac  putative branch site (score: 3)
                                            tgccctc  putative PPT
                ttgattaa  TA-rich tract