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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacagcggccatgcagtgcacggcggctcagaagcttggggttgtcttttcaacacactggttgttttcctcctaagcagccatctgccattcttccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAGGCCATGACGCACCCCTTCTTCGATGAGCTGCGGGATCCGGCCACGCGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05327
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15368033|gb|BI527459.1|BI527459
EST:     CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTG                         GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
EST: gi|6546838|gb|AV392622.1|AV392622
EST:     CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTG                         GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGC
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGC
EST: gi|161794837|gb|FC077383.1|FC077383
EST:     CCTGGACGAAGGTGTTCAGCAAGCGCATGCCGCCGGACGCCGTGGACCTG                         GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
EST: gi|34986544|gb|CF560461.1|CF560461
EST:     CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTG                         GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
EST: gi|161798027|gb|FC087776.1|FC087776
EST:     CCTGGACGAAGGTGTTCAGCAAGCGCATGCCGCCGGACGCCGTGGACCTG                         GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacacactggttgttttcctcctaagcagccatctgccattcttccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAGGCCATGACGCACCCCTTCTTCGATGAGCTGCGGGATCCGGCCACGCGGC
                              ccatctgccattcttc  CT-rich tract
           ttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggtacagcggccatgcagtgcacggcggctcagaagcttggggttgtcttttcaacacactggttgttttcctcctaagcagccatctgccattcttccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAGGCCATGACGCACCCCTTCTTCGATGAGCTGCGGGATCCGGCCACGCGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC