1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaacgtccgcgattgcagcgcaagtgctcatctaccgccaggggttgctgaccgatgttgtcctgccgctgctgcgtgtgtcgcgcctacccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG
species | Chlamydomonas reinhardtii |
transcript | EDP05070 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATTGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34987515|gb|CF561432.1|CF561432
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|22066976|gb|BQ817267.1|BQ817267
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34987514|gb|CF561431.1|CF561431
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTTTTCCACAAGAAG GCCAAGACCCCCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|10786240|gb|AV642912.1|AV642912
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34984015|gb|CF557932.1|CF557932
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|7546035|gb|AW676523.1|AW676523
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|22055211|gb|BQ811714.1|BQ811714
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTGGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAAACCCCCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34983766|gb|CF557683.1|CF557683
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|161805193|gb|FC091718.1|FC091718
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATTGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34990343|gb|CF564260.1|CF564260
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|10788173|gb|AV644845.1|AV644845
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|6550594|gb|AV396378.1|AV396378
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|10784804|gb|AV641476.1|AV641476
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34994842|gb|CF568759.1|CF568759
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34988338|gb|CF562255.1|CF562255
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|22074012|gb|BQ823256.1|BQ823256
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34981145|gb|CF555062.1|CF555062
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34989175|gb|CF563092.1|CF563092
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34988337|gb|CF562254.1|CF562254
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34984261|gb|CF558178.1|CF558178
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAATAAG GCCAAGACCACCAAGAAGATEST: gi|34982457|gb|CF556374.1|CF556374
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGAT
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCCCCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|10789531|gb|AV645260.1|AV645260
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGCGGTCAGACCAAGCCCGTGTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34991411|gb|CF565328.1|CF565328
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTTTTCCACAAGAAG GCCAAGGCCCCCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|7545738|gb|AW676226.1|AW676226
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34991412|gb|CF565329.1|CF565329
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|7546172|gb|AW676660.1|AW676660
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGAGCCAAGAGTGCAAGEST: gi|7545739|gb|AW676227.1|AW676227
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34984533|gb|CF558450.1|CF558450
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTTCGGTGGTCAGACCAAGCCCGTTTTCCCCAAGAAG GCCAAGACCCCCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34981094|gb|CF555011.1|CF555011
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|10789373|gb|AV645102.1|AV645102
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|22075594|gb|BQ824370.1|BQ824370
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|34987789|gb|CF561706.1|CF561706
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|7546171|gb|AW676659.1|AW676659
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGEST: gi|22055213|gb|BQ811715.1|BQ811715
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
EST: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAG GCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
genomic: GCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgaca ... cccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAG
ttgctgaccgatgttgtcctgccgctgctgcgtgtgtcgcgcctacccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG
tgctgac putative branch site (score: 2)
cctaccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaacgtccgcgattgcagcgcaagtgctcatctaccgccaggggttgctgaccgatgttgtcctgccgctgctgcgtgtgtcgcgcctacccaccacagGCCAAGACCACCAAGAAGATCGTGCTGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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