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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggagagctgttgtgcgcgcccggtcccgttcgctgataggtctaacccccgaacccccctccacaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAGGACATTAACCTGCGACGGATGATGTATCTGTGCATCAAGGACATTTGCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04926
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466252|gb|BP094165.1|BP094165
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10794354|gb|AV631720.1|AV631720
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49465037|gb|BP092950.1|BP092950
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAA                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469013|gb|BP096874.1|BP096874
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49467949|gb|BP095810.1|BP095810
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTG
EST: gi|49468728|gb|BP096589.1|BP096589
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTCGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469720|gb|BP097581.1|BP097581
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469119|gb|BP096980.1|BP096980
EST:     GCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: GCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10791117|gb|AV628483.1|AV628483
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10793000|gb|AV630366.1|AV630366
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49468010|gb|BP095871.1|BP095871
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49467077|gb|BP094990.1|BP094990
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10794486|gb|AV631852.1|AV631852
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10788582|gb|AV626302.1|AV626302
EST:     CCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: CCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10786480|gb|AV643152.1|AV643152
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTCGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49470909|gb|BP098770.1|BP098770
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10786326|gb|AV642998.1|AV642998
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469972|gb|BP097833.1|BP097833
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469982|gb|BP097843.1|BP097843
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49465126|gb|BP093039.1|BP093039
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTC
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcccggtcccgttcgctgataggtctaacccccgaacccccctccacaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAGGACATTAACCTGCGACGGATGATGTATCTGTGCATCAAGGACATTTGCC
                      gtctaac  putative branch site (score: 2)
                                    cccccctccac  putative PPT