1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggtgtgcgggggcggggtcccggcaacagtgcactgccatttggaagtccggtcttacctcgttgtggcgttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGACGCCCGACCAGACGCTGAAGCTGGAG
species | Chlamydomonas reinhardtii |
transcript | EDP04678 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG ATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGAEST: gi|15701693|gb|BI725998.1|BI725998
genomic: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGGgtaggtgtgc ... ttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
EST: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG ATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGAEST: gi|7593328|gb|AW707579.1|AW707579
genomic: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGGgtaggtgtgc ... ttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
EST: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG ATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGAEST: gi|161814033|gb|FC100044.1|FC100044
genomic: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGGgtaggtgtgc ... ttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
EST: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG ATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGAEST: gi|10793430|gb|AV630796.1|AV630796
genomic: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGGgtaggtgtgc ... ttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
EST: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG ATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGAEST: gi|161797060|gb|FC085665.1|FC085665
genomic: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGGgtaggtgtgc ... ttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
EST: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG ATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGAEST: gi|22064621|gb|BQ815905.1|BQ815905
genomic: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGGgtaggtgtgc ... ttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
EST: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGG ATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
genomic: CGCGGTGCTGGTGCTGGCGGACCAAACCCACCGTTCTAAGACCATTACGGgtaggtgtgc ... ttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGA
acagtgcactgccatttggaagtccggtcttacctcgttgtggcgttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGACGCCCGACCAGACGCTGAAGCTGGAG
gtcttac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgtgcgggggcggggtcccggcaacagtgcactgccatttggaagtccggtcttacctcgttgtggcgttgcacacagATGGCGGCAAGGAGCCAACTTGGAATGAGGTGTTCACCTTCCGCAACGTGACGCCCGACCAGACGCTGAAGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA