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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgaaacggtggtcgacgggcaggcagcattggcgggcacagcggcgcgcagtaatgtgttgacggcatcgcagacctctcctgtcgctgtattaatggtggcttcgtggctgaaaacttcgccgtaaccatcatcatgcaagtgctgactcgtcgtttcgtctcgacagGAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCGGCGGACGCAATCGCCTGTGCACTGCTGAGGTAGCAGCAATCCACGCTAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04033
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9028323|gb|BE238363.1|BE238363
EST:     CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCG                         GAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
genomic: CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCGgtgagtcgaa ... gtctcgacagGAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
EST: gi|16431361|gb|BI996587.1|BI996587
EST:     CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCG                         GAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
genomic: CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCGgtgagtcgaa ... gtctcgacagGAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
EST: gi|15691915|gb|BI716220.1|BI716220
EST:     CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCG                         GAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
genomic: CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCGgtgagtcgaa ... gtctcgacagGAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
EST: gi|10794304|gb|AV631670.1|AV631670
EST:     CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCG                         GAAACGGAGCGGCGGCGA
genomic: CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCGgtgagtcgaa ... gtctcgacagGAAACGGAGCGGCGGCGA
EST: gi|10125947|gb|BE724651.1|BE724651
EST:     CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCG                         GAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
genomic: CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCGgtgagtcgaa ... gtctcgacagGAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
EST: gi|16436574|gb|BM001794.1|BM001794
EST:     CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGTG                         GAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG
genomic: CTCCACCCGCCGTTCACAACGGAGGCAACCATGGACACGGAGATGCCGCGgtgagtcgaa ... gtctcgacagGAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttcgccgtaaccatcatcatgcaagtgctgactcgtcgtttcgtctcgacagGAAACGGAGCGGCGGCGACGAGGTGCTCCCTAGTGCGGACTCGTGGAAGCGGCGGACGCAATCGCCTGTGCACTGCTGAGGTAGCAGCAATCCACGCTAG
                            tgctgac  putative branch site (score: 2)
                                         tttcgtctc  putative PPT