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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtccgttgccgcgccttggctgcaaccccaaagagtcttgccatttatggtcccattctcccgccattcctttccacacatctgctgccactaccgtattggcatcttgcaactgctggctgctgcaatttcacatctccactcgatggttgtgcagATCCAGGCTCTGCAGTTCGAATGGGCGTGGCAGCACCCGGAGCGCAGCCTGATCGTGAGGCCCATCGCGCAGGCGCTGGGCAGGCAGCGCATGCAGGGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03965
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP03965 (Chlamydomonas reinhardtii), 3'ss of exon 3
lower sequence: GRMZM2G138943_T01 (Zea mays), 3'ss of exon 1
gtcagtccgttgccgcgccttggctgcaaccccaaagagtcttgccatttatggtcccattctcccgccattcctttccacacatctgctgccac--taccgtattggcatcttgcaactg---ctggctgctgcaatttcacatctccactcgatggttgtgcagATCCAGGCTCTGCAGTTCGAATGGGCGTGGCAGCACCCGGAGCGCAGCCTGATCGTG----AGGC--CCATCGCGC---AGGCGCTGGGCAGGCAGCGCATGCAGGGCG-------
                                                 || |   |   ||  |  ||    ||  ||     |  ||  |  |  |  || |  |  |||||||   |    || |||| |   | |||  |    ||||  |  ||| |   |      |||||||||||||| ||||||||||||||||||  |     |||   ||||    ||||  ||  || |    || |||| ||| |||| ||    || ||         
------------------------------------------------gtacgccgcggctcctcgaccccagctcgcccggtcttggcctctgccttttcgaacagaaatcttgctgtttagtctcgctgatctgaattctgaaaagcact--actgtt-tcttggcgtgcgctctgcagTTCGAGTGGGCGTGGCAGCACCCGACGGAGTCCCTCGCCGTGCGCAAGGCCGCCGCCGAGTTCAAGTCGCTCGGC-GGCATCGGCAACAAGGTCAAGCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcttgcaactgctggctgctgcaatttcacatctccactcgatggttgtgcagATCCAGGCTCTGCAGTTCGAATGGGCGTGGCAGCACCCGGAGCGCAGCCTGATCGTGAGGCCCATCGCGCAGGCGCTGGGCAGGCAGCGCATGCAGGGCG
                        aatttca  TA-rich tract