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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcgtgggaaagcaaagtggctttgcttcctgatggtcagccttgccgccctgacctcagtgcattctcaattagtcccatgcgcaacaacacttggggtaggcgtgtctgccgtacatcaacatttgtgtcctctgcttacacagGCGACCCTGGGGGCTCGTCAGCAGGGCGCTGGTCAGGGCCTTCACATCCACACAGTGCTGGGGTGCGGGGCCTTTGGCGTTGTGTACTTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03666
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15694221|gb|BI718526.1|BI718526
EST:     GCAATGCTGTGGGGCAACAGGACATTGGTGCGGCCATCACTGGAATGCAG                         GCGACCCTGGGGGCTCGTCAGCAGGGCGCTGGTCAGGGCCTTCACATCCAC
genomic: GCAATGCTGTGGGGCAACAGGACATTGGTGCGGCCATCACTGGAATGCAGgtgcgtgcgt ... gcttacacagGCGACCCTGGGGGCTCGTCAGCAGGGCGCTGGTCAGGGCCTTCACATCCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttggggtaggcgtgtctgccgtacatcaacatttgtgtcctctgcttacacagGCGACCCTGGGGGCTCGTCAGCAGGGCGCTGGTCAGGGCCTTCACATCCACACAGTGCTGGGGTGCGGGGCCTTTGGCGTTGTGTACTTGG
                                            tgcttac  putative branch site (score: 2)
                                       tcctctgctt  CT-rich tract
                             aacattt  TA-rich tract