1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgctcctcgcttcagcctccttgttgccctcaccctgcccccctcaccctgcccccctcaccctccccgcttcccctgcccccctacccgcgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGCCGGGACGAGTTCAAGGCGCTGCTGGACGAGGAGGAGCTGCGGGACAGCC
species | Chlamydomonas reinhardtii |
transcript | EDP03455 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAG GCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGCEST: gi|9210221|gb|BE337136.1|BE337136
genomic: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAGgtgcgggctg ... cgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGC
EST: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAG GCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGCEST: gi|15698798|gb|BI723103.1|BI723103
genomic: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAGgtgcgggctg ... cgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGC
EST: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAG GCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGCEST: gi|15698799|gb|BI723104.1|BI723104
genomic: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAGgtgcgggctg ... cgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGC
EST: GGCAGACCTCCATCCGACCCTACTGGCGCTGCTACTTCCCCTGCACTCAG GCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGCEST: gi|161800655|gb|FC085903.1|FC085903
genomic: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAGgtgcgggctg ... cgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGC
EST: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAG GCTATCATCTACGTGGTTGACAGCACGGACACGGAGCGCATCGGCATCAGCEST: gi|15698797|gb|BI723102.1|BI723102
genomic: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAGgtgcgggctg ... cgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGC
EST: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAG GCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGC
genomic: GGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCCCTGCACTCAGgtgcgggctg ... cgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGC
accctgcccccctcaccctccccgcttcccctgcccccctacccgcgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGCCGGGACGAGTTCAAGGCGCTGCTGGACGAGGAGGAGCTGCGGGACAGCC
ccctcac putative branch site (score: 3)
ccccctcaccctcccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctcctcgcttcagcctccttgttgccctcaccctgcccccctcaccctgcccccctcaccctccccgcttcccctgcccccctacccgcgccctcaagGCCATCATCTACGTGGTGGACAGCACGGACACGGAGCGCATCGGCATCAGCCGGGACGAGTTCAAGGCGCTGCTGGACGAGGAGGAGCTGCGGGACAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - ccctcac