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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggagccgagatgctggggtggccatggcgagggtgggggtggggattggggagccgggatgcggaaaatggaacaggatcccacccacccaatcgcccacccatccagGCCGTCGCCAAGGACGTCAACTACGATCCGCGTGATGACCCGCGGCGGCTGCGGCCGGGTGAGATTGACCCCAACCCCGAGGCCAAGCCCGCGCGCCCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03322
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785001|gb|AV641673.1|AV641673
EST:     GCCGCACGCCCGCGCAGTGCCTGGACCGATACGAGCGTCTGCTGGACCAG                         GCCGTCGCCAAGGACGTCAACTACGATCCGCGTGATGACCCGCGGCGGCTG
genomic: GCCGCACGCCCGCGCAGTGCCTGGACCGATACGAGCGTCTGCTGGACCAGgtgaggagcc ... acccatccagGCCGTCGCCAAGGACGTCAACTACGATCCGCGTGATGACCCGCGGCGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgggatgcggaaaatggaacaggatcccacccacccaatcgcccacccatccagGCCGTCGCCAAGGACGTCAACTACGATCCGCGTGATGACCCGCGGCGGCTGCGGCCGGGTGAGATTGACCCCAACCCCGAGGCCAAGCCCGCGCGCCCCG
                                          cccaccc  CT-rich tract
           aaaat  TA-rich tract