1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cggcctgactctatcgcctctgctcaatgtaacatgtgggcacccgcaactggaacgtcaccactcacatcctcacgcgcgcacatgcaaacctccacagAATCGACGAGGAGCAGCACGGCGGTGTGGCCGAGGTGCTGGTGGAGGGCTTCCCCACCTTCAGCGCAGTGTTCGTG
species | Chlamydomonas reinhardtii |
transcript | EDP02701 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCATCGCGCAAGGGCTGTGCACAGTGATCTTCTACCGTGGTGTGTTGAG AATCGACGAGGAGCAGCACGGCGGTGTGGCCGAGGTGCTGGTGGAGGEST: gi|15369449|gb|BI528875.1|BI528875
genomic: GCCATCGCGCAAGGGCTGTGCACAGTGATCTTCTACCGTGGTGTGTTGAGgtacgcatgg ... acctccacagAATCGACGAGGAGCAGCACGGCGGTGTGGCCGAGGTGCTGGTGGAGG
EST: CCATCGCGCAAGGGCTGTGCACAGTGATCTTCTACCGTGGNTGTGTTGAG AATCGACGAGGAGCAGCACGGCGGTGTGGCCGAGGTGCTGNTGGAGGGCT
genomic: CCATCGCGCAAGGGCTGTGCACAGTGATCTTCTACCGTGG-TGTGTTGAGgtacgcatgg ... acctccacagAATCGACGAGGAGCAGCACGGCGGTGTGGCCGAGGTGCTGGTGGAGGGCT
gcaactggaacgtcaccactcacatcctcacgcgcgcacatgcaaacctccacagAATCGACGAGGAGCAGCACGGCGGTGTGGCCGAGGTGCTGGTGGAGGGCTTCCCCACCTTCAGCGCAGTGTTCGTG
tcctcac putative branch site (score: 2)
cctccac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggcctgactctatcgcctctgctcaatgtaacatgtgggcacccgcaactggaacgtcaccactcacatcctcacgcgcgcacatgcaaacctccacagAATCGACGAGGAGCAGCACGGCGGTGTGGCCGAGGTGCTGGTGGAGGGCTTCCCCACCTTCAGCGCAGTGTTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - -tcaatgta
- - - - - - - - - - - - - - - -acatgtg
- - - - - - - - - - - - - - - - - - - - -acccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca