1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagggttacacgtacaacaagccgccgttcaatctcctgcctcgctgccacggactcgcgctttcaaccccttttgttcctcgaccctcacattatgcagGGATTTCGCAAAGTGGACCCCGACCGCTGGGAGTTCGCAAACGAGCACTTTGTGCGGGGCAAGAAGGAACAGTTGCGGGACATCCACCGGCGCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP02415 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tgccacggactcgcgctttcaaccccttttgttcctcgaccctcacattatgcagGGATTTCGCAAAGTGGACCCCGACCGCTGGGAGTTCGCAAACGAGCACTTTGTGCGGGGCAAGAAGGAACAGTTGCGGGACATCCACCGGCGCAAG
ccctcac putative branch site (score: 3)
ccctcac CT-rich tract
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagggttacacgtacaacaagccgccgttcaatctcctgcctcgctgccacggactcgcgctttcaaccccttttgttcctcgaccctcacattatgcagGGATTTCGCAAAGTGGACCCCGACCGCTGGGAGTTCGCAAACGAGCACTTTGTGCGGGGCAAGAAGGAACAGTTGCGGGACATCCACCGGCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -acgtaca
- - - - - - - - acaagcc
- - - - - - - - - - - - - - -caatctc
- - - - - - - - - - - - - - - - - - - - - - - - -acggact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accctca