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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtggcacactggcaccacacttagtggaccatccgtcacgagcctccaccccagcgaagcgagcccttcaagcgccttaacccagccccaagccgcgccctcacgccgccacccacctcacgcattcccacagGCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACGGCTGGGACACCT

Basic information

species Chlamydomonas reinhardtii
transcript EDP01561
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23359856|gb|BU647676.1|BU647676
EST:     GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATG                         GCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG
genomic: GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATGgtgggtggca ... attcccacagGCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG
EST: gi|10774821|gb|AV625644.1|AV625644
EST:     GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATG                         GCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG
genomic: GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATGgtgggtggca ... attcccacagGCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG
EST: gi|10790196|gb|AV627562.1|AV627562
EST:     GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATG                         GCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG
genomic: GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATGgtgggtggca ... attcccacagGCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG
EST: gi|10786088|gb|AV642760.1|AV642760
EST:     GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATG                         GCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG
genomic: GTGGACCGGGCTGCAGCAGCGAGATTGCTATCTTCTTCGAGAATGgtgggtggca ... attcccacagGCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacccagccccaagccgcgccctcacgccgccacccacctcacgcattcccacagGCCCCTACTCCATCAATGAGGACAGGCGCACGCTGAACGAGACCACCTACGGCTGGGACACCT
                                    acctcac  putative branch site (score: 3)
                                            cattccc  CT-rich tract