1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cacattgcgtgcgcgcgccctcattcttctcccgctgccttcgtggacaactcaactcataccacctgtgatcacatacgccccgcccctttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCTTCCTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGC
species | Chlamydomonas reinhardtii |
transcript | EDP01119 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGACCAAGACCCGACTGGAGAAG GTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCEST: gi|15693757|gb|BI718062.1|BI718062
genomic: GTGAAGACCAAGACCCGACTGGAGAAGgtatggctgc ... ttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGC
EST: GTGAAGACCAAGACCCGACTGGAGAAG GTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCEST: gi|16072687|gb|BI874683.1|BI874683
genomic: GTGAAGACCAAGACCCGACTGGAGAAGgtatggctgc ... ttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGC
EST: GTGAAGACCAAGACCCGACTGGAGAAG GTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCEST: gi|14233566|gb|BG852382.1|BG852382
genomic: GTGAAGACCAAGACCCGACTGGAGAAGgtatggctgc ... ttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGC
EST: GTGAAGACCAAGACCCGACTGGAGAAG GTGATCAACGCCTATTGAAACAAGAAGGEST: gi|16072247|gb|BI874243.1|BI874243
genomic: GTGAAGACCAAGACCCGACTGGAGAAGgtatggctgc ... ttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGG
EST: GTGAAGACCAAGACCCGACTGGAGAAG GTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGC
genomic: GTGAAGACCAAGACCCGACTGGAGAAGgtatggctgc ... ttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGC
gacaactcaactcataccacctgtgatcacatacgccccgcccctttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCTTCCTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGC
cgccccgcccctttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacattgcgtgcgcgcgccctcattcttctcccgctgccttcgtggacaactcaactcataccacctgtgatcacatacgccccgcccctttctccgcagGTGTTCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCTTCCTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - -tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - -caactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - actcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatac