Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcggggcctgcatagggttcagcaccgttgcaagtttgtgcgcacggatttgctgaatgattgcttgcggctgctactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785653|gb|AV642325.1|AV642325
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|49462387|gb|BP090300.1|BP090300
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACAT
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACAT
EST: gi|6548949|gb|AV394733.1|AV394733
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|22067149|gb|BQ817372.1|BQ817372
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|10777114|gb|AV633794.1|AV633794
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|22068250|gb|BQ818189.1|BQ818189
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|8932860|gb|BE227621.1|BE227621
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|10792144|gb|AV629510.1|AV629510
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|15697484|gb|BI721789.1|BI721789
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|22060823|gb|BQ813924.1|BQ813924
EST:     CGAGCGGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCCCCG
genomic: CGAGCG-CGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|22069902|gb|BQ819380.1|BQ819380
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|49468817|gb|BP096678.1|BP096678
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCT
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCT
EST: gi|23361192|gb|BU649012.1|BU649012
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|14240802|gb|BG859618.1|BG859618
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|6549728|gb|AV395512.1|AV395512
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCC
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCC
EST: gi|6544288|gb|AV390072.1|AV390072
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|10771169|gb|AV621992.1|AV621992
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|6547218|gb|AV393002.1|AV393002
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|15691958|gb|BI716263.1|BI716263
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|10784886|gb|AV641558.1|AV641558
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|49467763|gb|BP095624.1|BP095624
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|10775671|gb|AV632351.1|AV632351
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|22064859|gb|BQ816064.1|BQ816064
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|22071695|gb|BQ821033.1|BQ821033
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|34985582|gb|CF559499.1|CF559499
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|6545451|gb|AV391235.1|AV391235
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGAC
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGAC
EST: gi|6545840|gb|AV391624.1|AV391624
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|14239601|gb|BG858417.1|BG858417
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|10794479|gb|AV631845.1|AV631845
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCT
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCT
EST: gi|6542376|gb|AV388160.1|AV388160
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGAC
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGAC
EST: gi|34986788|gb|CF560705.1|CF560705
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|14227441|gb|BG846257.1|BG846257
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
EST: gi|22076101|gb|BQ824877.1|BQ824877
EST:     CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAG                         GTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG
genomic: CCGAGCGCGTCGTGCACGCCCGCGGCGCTGCGGCAAAGGGCTTCTTCGAGgtgcgcgggg ... tactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaagtttgtgcgcacggatttgctgaatgattgcttgcggctgctactatgcagGTGACGCACGACATCTCAGCCCTGACGGCGGCCGACTTCCTGCGCGCGCCGGGCGTGCAG
                          aatgatt  TA-rich tract