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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgccgttcctccttccagtacggcacatccttcttggctcctctgccgcatcacctcctgctcctcctgctgcccttcatgctgctgccacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGACCGTGTGCATGATCCTGTCTATGTCGGTGGTGTTTGGCGGCGCCGTGTTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP00052
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16436814|gb|BM002034.1|BM002034
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|14237479|gb|BG856295.1|BG856295
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|14229257|gb|BG848073.1|BG848073
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|10128278|gb|BE726982.1|BE726982
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|22069421|gb|BQ819021.1|BQ819021
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|16072948|gb|BI874944.1|BI874944
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|14240624|gb|BG859440.1|BG859440
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|14242111|gb|BG860927.1|BG860927
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|23367067|gb|BU654886.1|BU654886
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|15694129|gb|BI718434.1|BI718434
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
EST: gi|15704241|gb|BI728546.1|BI728546
EST:     ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGA                         AGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC
genomic: ATCGCCGTGTGGGCCGGCCTCAACTTCCAGAAGCGCGCCATCTTCCTCGAgtgagtgtat ... cacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccgcatcacctcctgctcctcctgctgcccttcatgctgctgccacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGACCGTGTGCATGATCCTGTCTATGTCGGTGGTGTTTGGCGGCGCCGTGTTC
                                            ccacctc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtgccgttcctccttccagtacggcacatccttcttggctcctctgccgcatcacctcctgctcctcctgctgcccttcatgctgctgccacctcgcagAGCCAAGGCCGACGGCCCCTACGACTCCCGCTTCCTGCCCGTGCTGCTGACCGTGTGCATGATCCTGTCTATGTCGGTGGTGTTTGGCGGCGCCGTGTTC

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