1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atattttcacacacgtgtatcgtgcactgtcctattcttttgccttaacgcacataaaccccacgccacaactcgcacgcacacgcacatgcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAGGCGGACGCCAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACC
species | Chlamydomonas reinhardtii |
transcript | EDP00016 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAG GTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAGEST: gi|15695989|gb|BI720294.1|BI720294
genomic: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAGgtgcgtgtgt ... gcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAG
EST: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAG GTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAGEST: gi|23365110|gb|BU652930.1|BU652930
genomic: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAGgtgcgtgtgt ... gcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAG
EST: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACAAG GTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAGEST: gi|15700890|gb|BI725195.1|BI725195
genomic: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAGgtgcgtgtgt ... gcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAG
EST: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAG GTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAGEST: gi|15700889|gb|BI725194.1|BI725194
genomic: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAGgtgcgtgtgt ... gcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAG
EST: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAG GTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAG
genomic: GCCGCGTGGTCACCATTGACAGCTACGAGGACGTGCCCGAGAACGACGAGgtgcgtgtgt ... gcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAG
taacgcacataaaccccacgccacaactcgcacgcacacgcacatgcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAGGCGGACGCCAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACC
ccttaac putative branch site (score: 3)
acataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattttcacacacgtgtatcgtgcactgtcctattcttttgccttaacgcacataaaccccacgccacaactcgcacgcacacgcacatgcacatgcagGTGGCTCTGAAGAAGGCCGCCGCGCACCAGCCTGTGGCTGTGGCCATTGAGGCGGACGCCAAGTCGTTCCAGCTGTACGGCGGCGGCGTGTACGACGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - acacacg
- - - - - - - - - - cgtgcac
- - - - - - - - - - - - - - - - - - - - - - - -acgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgca