1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tagggcgcgggcgtggacatgggcggcaagaagggttttgcatcttggcagtgacgtgatgtcggccgtgtgtccgccccgctgccctatccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAAGACTTACCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP00001 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|14238171|gb|BG856987.1|BG856987
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|8933061|gb|BE227822.1|BE227822
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|8933274|gb|BE228035.1|BE228035
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|49466496|gb|BP094409.1|BP094409
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|16073322|gb|BI875318.1|BI875318
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|16436985|gb|BM002205.1|BM002205
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|8933153|gb|BE227914.1|BE227914
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|15692344|gb|BI716649.1|BI716649
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|10786766|gb|AV643438.1|AV643438
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGEST: gi|15695572|gb|BI719877.1|BI719877
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCG
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|10128065|gb|BE726641.1|BE726641
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: AGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGACTGCTGCACCGTGGAACCGAGAAGTTGCTGGAGTACAEST: gi|10126192|gb|BE724896.1|BE724896
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|8933123|gb|BE227884.1|BE227884
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAEST: gi|15704411|gb|BI728716.1|BI728716
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
EST: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGG ACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
genomic: CGTGCTGCGCCTGGTGCTGGAGATGCAGGGCGAGATTATCATGCGCGCGGgtgagagcgg ... ccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACA
tggcagtgacgtgatgtcggccgtgtgtccgccccgctgccctatccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAAGACTTACCTGCAG
ccctatccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagggcgcgggcgtggacatgggcggcaagaagggttttgcatcttggcagtgacgtgatgtcggccgtgtgtccgccccgctgccctatccctgcgcagACCCTCACATCGGCCTGCTGCACCGCGGTACCGAGAAGTTGCTGGAGTACAAGACTTACCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - -tggacatg
- - - - - - - - - - - - - - - - - - tttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgtgtg