Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggcgcgagcggggggggttgtaattccatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccccccccccccgcctgctatactactgttcctggctatgccttcacttcttatatgattatgaatgtaacccctcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTGGATAAGGACGGCATCCGCACCATCAAGACCGTGTAAGTGTTTAGGTGAT

Basic information

species Chlamydomonas reinhardtii
transcript EDO99016
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161814305|gb|FC102071.1|FC102071
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|23365807|gb|BU653627.1|BU653627
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|161801164|gb|FC087062.1|FC087062
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|22065968|gb|BQ816667.1|BQ816667
EST:     ATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAGAAACGGCTGGTGGTGGCCCCGCCGCATTACATCATCAAGGTGGTG
genomic: ATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|22072377|gb|BQ821715.1|BQ821715
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAAAAACGGCTGGTGGTGGCGCCCCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|161818776|gb|FC104211.1|FC104211
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|10781453|gb|AV638133.1|AV638133
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|12250689|gb|BF860552.1|BF860552
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAAAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
EST: gi|23365808|gb|BU653628.1|BU653628
EST:     ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAG                         GTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG
genomic: ACCTCACGGTGGATGAGGCGACCGCCATGATGGAGGCCGGCATTGCCGAGgtgagggcgc ... tcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctggctatgccttcacttcttatatgattatgaatgtaacccctcccctgcagGTCAAGAAGCGGCTGGTGGTGGCGCCGCCGCACTACATCATCAAGGTGGTGGATAAGGACGGCATCCGCACCATCAAGACCGTGTAAGTGTTTAGGTGAT
                                   atgtaac  putative branch site (score: 3)
                                         cccctcccctgc  CT-rich tract
                     ttatatgattatgaat  TA-rich tract