1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gccgtgctgcccgccgctcgggctgctcccctcgcgtgcggcctcgcttggcacctgccttacctcacacgccacacggccggccgcaatgcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGTGACGCTGCCGCCGGGCCGCCACAAGATTGTCATCCTGGACGAGGCGGAC
species | Chlamydomonas reinhardtii |
transcript | EDO98380 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCG CGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGTEST: gi|8287554|gb|BE025113.1|BE025113
genomic: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCGgcaagtcgcg ... gcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGT
EST: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCG CGGCATCGACGTGEST: gi|16436997|gb|BM002217.1|BM002217
genomic: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCGgcaagtcgcg ... gcccccgcagCGGCATCGACGTG
EST: GGACCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCG CGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCEST: gi|161794755|gb|FC077353.1|FC077353
genomic: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCGgcaagtcgcg ... gcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGC
EST: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCG CGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGTEST: gi|15697306|gb|BI721611.1|BI721611
genomic: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCGgcaagtcgcg ... gcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGT
EST: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCG CGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGTEST: gi|15698627|gb|BI722932.1|BI722932
genomic: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCGgcaagtcgcg ... gcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGT
EST: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGAC-G CGG-ATCGGACGTGGTGCGCEST: gi|15698700|gb|BI723021.1|BI723021
genomic: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCGgcaagtcgcg ... gcccccgcagCGGCATCG-ACGTGGTGCGC
EST: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCG CGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGT
genomic: GGGCCCAACTACAAAGAGGCCGTGCTCGAGCTCAACGCCTCAGACGACCGgcaagtcgcg ... gcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGT
gcttggcacctgccttacctcacacgccacacggccggccgcaatgcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGTGACGCTGCCGCCGGGCCGCCACAAGATTGTCATCCTGGACGAGGCGGAC
acctcac putative branch site (score: 3)
tgccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgtgctgcccgccgctcgggctgctcccctcgcgtgcggcctcgcttggcacctgccttacctcacacgccacacggccggccgcaatgcccccgcagCGGCATCGACGTGGTGCGCAACAAGATCAAGATGTTTGCGCAGAAGAAGGTGACGCTGCCGCCGGGCCGCCACAAGATTGTCATCCTGGACGAGGCGGAC
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